PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 351aa    MW: 38700.5 Da    PI: 7.4088
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G00120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-13244328383
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS...-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg...rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      k+lt+sdv++ gr+vlpkk ae+    + ++ +  l +ed       +W++k++y  ++ks++y+l     eF k +gL++gD+++++
  LPERR08G00120.1 244 KELTKSDVGNVGRIVLPKKDAEASlpPLLQRDPLILHMED--MvlpVTWKFKYRYwpNNKSRMYILD-SAGEFLKTHGLQAGDVIIIY 328
                      899******************9999944445665566666..4445*********777777777777.99***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-16241328IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-21241336IPR015300DNA-binding pseudobarrel domain
CDDcd100175.90E-19241339No hitNo description
SMARTSM010197.6E-7242342IPR003340B3 DNA binding domain
PfamPF023625.7E-10244328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGQMDGGDGG GGQPYHHYQA LLAAVQQQNV PFPLPFPSSP TGSEAGPHNY HHHQSHSHSH  60
SHNAALAPSP SPTPSRGFAD WSASTSAFTS LASHSSPAPS NALHYSFSPC YAFWTHYMLN  120
KNAYPPSFPP PPHDDQLRLA NNHPIRDAPG PASTYGVDSF TSPSMAPNIC THMPPIEGPI  180
SVKEEKKPEV FPRVVKSTDE LETRNSAVEF HCETVGTLPE SKQGHESRAT KLLNSGEYQV  240
ILRKELTKSD VGNVGRIVLP KKDAEASLPP LLQRDPLILH MEDMVLPVTW KFKYRYWPNN  300
KSRMYILDSA GEFLKTHGLQ AGDVIIIYKN LAPDKFIIRG EKAIHQQTTN P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074560.0AK107456.1 Oryza sativa Japonica Group cDNA clone:002-128-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648159.10.0PREDICTED: B3 domain-containing protein IDEF1 isoform X1
SwissprotQ6Z1Z30.0IDEF1_ORYSJ; B3 domain-containing protein IDEF1
TrEMBLA0A0D9X3C80.0A0A0D9X3C8_9ORYZ; Uncharacterized protein
STRINGLOC_Os08g01090.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-33B3 family protein